Package: goeveg 0.7.5

goeveg: Functions for Community Data and Ordinations

A collection of functions useful in (vegetation) community analyses and ordinations. Includes automatic species selection for ordination diagrams, NMDS stress/scree plots, species response curves, merging of taxa as well as calculation and sorting of synoptic tables.

Authors:Friedemann von Lampe [aut, cre], Jenny Schellenberg [aut]

goeveg_0.7.5.tar.gz
goeveg_0.7.5.zip(r-4.5)goeveg_0.7.5.zip(r-4.4)goeveg_0.7.5.zip(r-4.3)
goeveg_0.7.5.tgz(r-4.4-any)goeveg_0.7.5.tgz(r-4.3-any)
goeveg_0.7.5.tar.gz(r-4.5-noble)goeveg_0.7.5.tar.gz(r-4.4-noble)
goeveg_0.7.5.tgz(r-4.4-emscripten)goeveg_0.7.5.tgz(r-4.3-emscripten)
goeveg.pdf |goeveg.html✨
goeveg/json (API)
NEWS

# Install 'goeveg' in R:

install.packages('goeveg', repos = c('https://fvlampe.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/fvlampe/goeveg/issues

Datasets:

scale_tabs - Conversion tables for cover-abundance scales
schedenenv - Header data for Vegetation releves from Scheden
schedenveg - Vegetation releves from Scheden

On CRAN:

17 exports 4 stars 2.52 score 72 dependencies 6 mentions 90 scripts 1.8k downloads

Last updated 4 months agofrom:2059a28116. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 14 2024
R-4.5-win	OK	Sep 14 2024
R-4.5-linux	OK	Sep 14 2024
R-4.4-win	OK	Sep 14 2024
R-4.4-mac	OK	Sep 14 2024
R-4.3-win	OK	Sep 14 2024
R-4.3-mac	OK	Sep 14 2024

Exports:clean_matrix cov2per cv deg2rad dimcheckMDS merge_taxa ordiselect per2cov racurve racurves rad2deg screeplot_NMDS sem specresponse synsort syntable trans_matrix

Dependencies:backports base64enc bslib cachem checkmate cli cluster colorspace data.table digest dotCall64 evaluate fansi farver fastmap fields fontawesome foreign Formula fs ggplot2 glue gridExtra gtable highr Hmisc htmlTable htmltools htmlwidgets isoband jquerylib jsonlite knitr labeling lattice lifecycle magrittr maps MASS Matrix memoise mgcv mime munsell nlme nnet permute pillar pkgconfig R6 rappdirs RColorBrewer Rcpp rlang rmarkdown rpart rstudioapi sass scales spam stringi stringr tibble tinytex utf8 vctrs vegan viridis viridisLite withr xfun yaml

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Clean species matrix	clean_matrix
Conversion between cover-abundance codes and percentage cover	cov2per per2cov
Coefficient of variation (CV)	cv
Conversion between degrees and radians	deg2rad rad2deg
Merge taxa with identical names	merge_taxa
Species selection for ordination plots	ordiselect
Rank-abundance curves	racurve
Multiple rank-abundance curves	racurves
Conversion tables for cover-abundance scales	scale_tabs
Header data for Vegetation releves from Scheden	schedenenv
Vegetation releves from Scheden	schedenveg
Scree plot/Stress plot for NMDS	dimcheckMDS screeplot_NMDS
Standard error of the mean (SEM)	sem
Species response curves	specresponse
Sorting functions for synoptic tables	synsort
Synoptic tables and calculation of cluster-wise frequencies, fidelity and differential species character	syntable
Transpose species matrix	trans_matrix